Evaluation of the usefulness of a predictive model for the diagnosis of COVID-19 in relation to the TR-PCR test and rapid test, in patients at the Univalle Sud Hospital
DOI:
https://doi.org/10.56294/mw2024614Keywords:
COVID-19, molecular diagnostic techniques, predictive models, rapid diagnostic tests, sensitivity, specificityAbstract
Objective: Early diagnosis for COVID-19 with rapid antigen test (PRA) and real-time polymerase chain reaction (TR-PCR), applying a predictive model. Material and methods: Retro-prospective, observational, longitudinal study; in 2020, a PRA and TR-PCR indication score for COVID-19 was applied to 98 patients (age, fever, respiratory symptoms, chest X-ray, comorbidities, place of residence and work activity); > 4 indicated taking TR-PCR (χ2=0.531, p>0.05), area under the curve (AUC) of 0.5; 3 regression models were performed, the third was more effective (vital signs and clinical signs) to decide positivity; in 2023, 284 patients were included to validate the model. Results: Mean age 47.7±16.7, frequent symptoms with cough, fever and asthenia; mean systolic pressure 119.7±15.6 mmHg and diastolic 74.8±10.9 mmHg; TR-PCR with a sensitivity of 85 %, a validity rate of 49 %; positive predictive value of 48 %; negative predictive value 55 %, positive likelihood ratio 1.019; Cohen's Kappa index, (κ=0.016, 95% CI: -0.073 to 0.1). Conclusions: Molecular tests were contrasted with vital signs and clinical signs; We consider that our model can be useful, but its validation still needs to continue and be applied to more patients.
References
1. Callahan CJ, Lee R, Zulauf KE, Tamburello L, Smith KP, Previtera J, et al. Open Development and Clinical Validation of Multiple 3D-Printed Nasopharyngeal Collection Swabs: Rapid Resolution of a Critical COVID-19 Testing Bottleneck. J Clin Microbiol [Internet]. 2020 Aug 1 [cited 2024 Nov 25];58(8). Available from: https://pubmed.ncbi.nlm.nih.gov/32393482/
2. Zowawi HM, Alenazi TH, AlOmaim WS, Wazzan A, Alsufayan A, Hasanain RA, et al. Portable RT-PCR System: a Rapid and Scalable Diagnostic Tool for COVID-19 Testing. J Clin Microbiol [Internet]. 2021 May 1 [cited 2024 Dec 4];59(5). Available from: https://pubmed.ncbi.nlm.nih.gov/33674285/
3. Seymen AA, Gulten E, Ozgur E, Ortaç B, Akdemir I, Cinar G, et al. Clinical evaluation of DIAGNOVIR SARS-CoV-2 ultra-rapid antigen test performance compared to PCR-based testing. Sci Rep [Internet]. 2023 Dec 1 [cited 2024 Dec 4];13(1). Available from: https://pubmed.ncbi.nlm.nih.gov/36932107/
4. Pan Y, Li X, Yang G, Fan J, Tang Y, Zhao J, et al. Serological immunochromatographic approach in diagnosis with SARS-CoV-2 infected COVID-19 patients. J Infect [Internet]. 2020 Jul 1 [cited 2024 Nov 24];81(1):e28–32. Available from: https://pubmed.ncbi.nlm.nih.gov/32283141/
5. Brodin P. Immune determinants of COVID-19 disease presentation and severity. Nature Medicine 2021 27:1 [Internet]. 2021 Jan 13 [cited 2024 Nov 24];27(1):28–33. Available from: https://www.nature.com/articles/s41591-020-01202-8
6. Wu S, Archuleta S, Ming LS, Somani J, Chye QS, Fisher D. Serial antigen rapid testing in staff of a large acute hospital. Lancet Infect Dis [Internet]. 2022 Jan 1 [cited 2024 Nov 24];22(1):14–5. Available from: https://pubmed.ncbi.nlm.nih.gov/34883064/
7. Chen J, Niu Z, Li H, Tang D, Zhang P. Analysis of Nucleic Acid and Antibody Detection Results for SARS-CoV-2 Infection. Arch Iran Med [Internet]. 2021 May 1 [cited 2024 Nov 24];24(5):427–33. Available from: https://pubmed.ncbi.nlm.nih.gov/34196209/
8. Kocagoz T, Can O, Yurttutan Uyar N, Aksoy E, Polat T, Cankaya D, et al. Simple concentration method enables the use of gargle and mouthwash instead of nasopharyngeal swab sampling for the diagnosis of COVID-19 by PCR. Eur J Clin Microbiol Infect Dis [Internet]. 2021 Dec 1 [cited 2024 Nov 24];40(12):2617–22. Available from: https://pubmed.ncbi.nlm.nih.gov/34448088/
9. Soni A, Herbert C, Lin H, Yan Y, Pretz C, Stamegna P, et al. Performance of Rapid Antigen Tests to Detect Symptomatic and Asymptomatic SARS-CoV-2 Infection : A Prospective Cohort Study. Ann Intern Med [Internet]. 2023 Jul 1 [cited 2024 Nov 24];176(7):975–82. Available from: https://pubmed.ncbi.nlm.nih.gov/37399548/
10. SOLUTION: Essential medical statistics 2nd ed b kirkwood j sterne wiley blackwell 2003 ww - Studypool [Internet]. [cited 2024 Nov 22]. Available from: https://www.studypool.com/documents/16816205/essential-medical-statistics-2nd-ed-b-kirkwood-j-sterne-wiley-blackwell-2003-ww
11. Roman J _Francisco. Guía Práctica del Curso de Bioestadística Aplicada a las Ciencias de la Salud [Internet]. [cited 2024 Nov 22]. Available from: https://www.academia.edu/10906749/Gu%C3%ADa_Pr%C3%A1ctica_del_Curso_de_Bioestad%C3%ADstica_Aplicada_a_las_Ciencias_de_la_Salud
12. Montgomery D, Runger GC. Probabilidad y estadística para ingenieros - Montgomery y Runger - III Ed. Probabilidad y Estadística aplicadas a la Ingeniería [Internet]. 2003 [cited 2024 Nov 22];486. Available from: https://www.academia.edu/10272859/Probabilidad_y_estad%C3%ADstica_para_ingenieros_Montgomery_y_Runger_III_Ed
13. Achenbach CJ, Caputo M, Hawkins C, Balmert LC, Qi C, Odorisio J, et al. Clinical evaluation of the Diagnostic Analyzer for Selective Hybridization (DASH): A point-of-care PCR test for rapid detection of SARS-CoV-2 infection. PLoS One [Internet]. 2022 Jun 1 [cited 2024 Nov 26];17(6):e0270060. Available from: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0270060
14. Amer AYA, Wouters F, Vranken J, Dreesen P, Boer D de K de, Rosmalen F van, et al. Vital Signs Prediction for COVID-19 Patients in ICU. Sensors (Basel) [Internet]. 2021 Dec 1 [cited 2024 Nov 26];21(23):8131. Available from: https://pmc.ncbi.nlm.nih.gov/articles/PMC8662454/
15. Bos DAG, Lagrou K, Verbakel JY. Prospective Performance Evaluation of the miDiagnostics COVID-19 PCR Test for Rapid SARS-CoV-2 Detection on Nasopharyngeal Swabs. J Clin Microbiol [Internet]. 2023 May 1 [cited 2024 Nov 26];61(5). Available from: https://pubmed.ncbi.nlm.nih.gov/37093001/
16. Joshi RP, Pejaver V, Hammarlund NE, Sung H, Lee SK, Furmanchuk A, et al. A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results. J Clin Virol [Internet]. 2020 Aug 1 [cited 2024 Nov 26];129. Available from: https://pubmed.ncbi.nlm.nih.gov/32544861/
17. Mei X, Lee HC, Diao K yue, Huang M, Lin B, Liu C, et al. Artificial intelligence-enabled rapid diagnosis of patients with COVID-19. Nat Med [Internet]. 2020 Aug 1 [cited 2024 Dec 1];26(8):1224–8. Available from: https://pubmed.ncbi.nlm.nih.gov/32427924/
18. Alemi F, Vang J, Bagais WH, Guralnik E, Wojtusiak J, Moeller FG, et al. Combined Symptom Screening and At-Home Tests for COVID-19. Qual Manag Health Care [Internet]. 2023 Jan 1 [cited 2024 Dec 1];32(Suppl 1):S11–20. Available from: https://pubmed.ncbi.nlm.nih.gov/36579704/.
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Copyright (c) 2024 Annier Jesús Fajardo Quesada , René Herrero Pacheco , Robin Fajardo Alcalá , Rolando Javier Álvarez Pérez , Pedro Miguel Alonso Batista , Dayanis Rodríguez Castillo (Author)

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